PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29661.m000923
Common NameLOC8283369, RCOM_0580340
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family GRAS
Protein Properties Length: 512aa    MW: 58195 Da    PI: 6.259
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29661.m000923genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS347.52.1e-1061265113374
           GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                    + Lle A+a+++++ +++q+l++ l+el sp+gd  ++la+yf++AL +r+++s++++y++l++ ++++ + +++ +++  f+evsP+ +f+h+ +
  29661.m000923 126 DILLETARAIADKNSARVQQLMWMLNELGSPYGDIDKKLASYFLQALFSRMTDSGERCYRTLASASDKTCSFESTRKMVLKFQEVSPWTTFGHVSC 221
                    689***********************************************************9888886665555555556*************** PP

           GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..............skeeleetgerLakfAeelgvpfefnv 180
                    N aI+ea+ege+++HiiD++ ++++QWp+Ll+aLa+R++++p+lR+T++++++++               ++ ++e+g+r++kfA+ +gvpf+fnv
  29661.m000923 222 NGAIMEAFEGESKLHIIDISNTYCTQWPTLLEALATRTDETPHLRLTTIVASKTNggggggggncglvsAQKVMKEIGSRMEKFARLMGVPFKFNV 317
                    *************************************************9988779************99999*********************** PP

           GRAS 181 lvak.rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse....sFlerflealeyysalfdsl 271
                    +++  +l dl+l+eL++k++Eala+n++ +lh++     +++++rd +++ +++l+P+++++ve+ead++ +    +F+++f e+l+++ + f+sl
  29661.m000923 318 IHHAgDLCDLNLSELDIKEDEALAINCIGSLHSVT----TVANRRDYIISNFRRLQPRIITIVEEEADLDVGidglDFVRGFQECLRWFRVYFESL 409
                    *7777*****************************8....888889*********************8875544555******************** PP

           GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.sgslvlgWkdrp 366
                    e++++r+s+er ++Er   gr+iv++vac+ +e++er+e++ +W++rl+++G++p+ +s+++ +++++llr++k +g+++ ++ ++ ++l+Wk++p
  29661.m000923 410 EESFSRTSNERLMLERS-AGRAIVDLVACQPSESIERREKATRWSSRLHACGYSPILFSDEVCDDVRALLRRYK-EGWSMTQSgHAGIFLCWKEQP 503
                    *****************.********************************************************.88887776256666******* PP

           GRAS 367 LvsvSaWr 374
                    +v++SaW+
  29661.m000923 504 VVWASAWK 511
                    *******8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098549.12998491IPR005202Transcription factor GRAS
PfamPF035147.4E-104126511IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0009956Biological Processradial pattern formation
GO:0045930Biological Processnegative regulation of mitotic cell cycle
GO:0048366Biological Processleaf development
GO:0055072Biological Processiron ion homeostasis
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 512 aa     Download sequence    Send to blast
MDTLFRLVSL QQQQSDQSFN NSTSRTSSSS RSSRQNNHHH HHHQYQQEDE ECFNFFMDEE  60
DFSSSSSKHY YPYHHQQQQQ HTTATTTTTT VTTPNTTTST LESTDHFSFS PSHDLNFDFS  120
SRWATDILLE TARAIADKNS ARVQQLMWML NELGSPYGDI DKKLASYFLQ ALFSRMTDSG  180
ERCYRTLASA SDKTCSFEST RKMVLKFQEV SPWTTFGHVS CNGAIMEAFE GESKLHIIDI  240
SNTYCTQWPT LLEALATRTD ETPHLRLTTI VASKTNGGGG GGGGNCGLVS AQKVMKEIGS  300
RMEKFARLMG VPFKFNVIHH AGDLCDLNLS ELDIKEDEAL AINCIGSLHS VTTVANRRDY  360
IISNFRRLQP RIITIVEEEA DLDVGIDGLD FVRGFQECLR WFRVYFESLE ESFSRTSNER  420
LMLERSAGRA IVDLVACQPS ESIERREKAT RWSSRLHACG YSPILFSDEV CDDVRALLRR  480
YKEGWSMTQS GHAGIFLCWK EQPVVWASAW KP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-3215851137375GRAS family transcription factor containing p
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002525276.10.0PREDICTED: protein SHORT-ROOT
SwissprotQ9SZF70.0SHR_ARATH; Protein SHORT-ROOT
TrEMBLB9SH070.0B9SH07_RICCO; Chitin-inducible gibberellin-responsive protein, putative
STRINGPOPTR_0012s06430.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF129734106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37650.10.0GRAS family protein